عنوان

Bacteriophages

9781588296825 (v.1)

9781603275644 (v. 2)

9781493973439 (v. 3)

bnb

E3057

انگلیسی

Bacteriophages

methods and protocols

edited by Martha R.J. Clokie, Andrew M. Kropinski, Rob Lavigne

New York

Humana Press

2009 -

v.

ill.

(Methods in molecular biology

(Springer protocols)

v. 501-502, 1681)

Includes bibliographical references and index.

v.1. Isolation, characterization, and interactions -- v.2. Molecular and applied aspects.

v. 1. Isolation, characterization, and interactions: v. 1. Sec. 1. Methods for the isolation of viruses from environmental samples / K. Eric Wommack ... [et al.] -- 2. Bacteriophage enrichment from water and soil / Rohan Van Twest and Andrew M. Kropinski -- 3. Isolation of phage via induction of lysogens / Raul R. Raya and Elvira M. Hebert -- 4. Isolation of cyanophages from aquatic environments / Andrew D. Millard -- 5. Isolation of viruses from high temperature environments / Jennifer Fulton, Trevor Douglas and Mark Young -- 6. Isolation of novel large and aggregating bacteriophages / Philip Serwer ... [et al.] -- v. 1. Sec. 2. Bacteriophage characterization: 7. Enumeration of bacteriophages by double agar overlay plaque assay / Andrew M. Kropinski ... [et al.] -- 8. Enumeration of bacteriophages by the direct plating plaque assay / Amanda Mazzocco ... [et al.] -- 9. Enumeration of bacteriophages using the small drop plaque assay system / Amanda Mazzocco ... [et al.] -- 10. Determination of virus abundance by epifluorescence microscopy / Alice C. Ortmann and Curtis A. Suttle -- 11. Enumeration of bacteriophages using flow cytometry / Corina P. D. Brussaard -- 12. Basic phage electron microscopy / Hans-W. Ackermann -- 13. Phage classification and characterization / Hans-W. Ackermann -- 14. Phage host range and efficiency of plating / Elizabeth Kutter -- 15. Measurement of the rate of attachment of bacteriophage to cells / Andrew M. Kropinski -- 16. Measurement of the bacteriophage inactivation kinetics with purified receptors / Andrew M. Kropinski -- 17. Bacteriophage plaques / Stephen T. Abedon and John Yin -- 18. Practical methods for determining phage growth parameters / Paul Hyman and Stephen T. Abedon -- 19. Phage production and maintenance of stocks, including expected stock lifetimes / Louis-Charles Fortier and Sylvain Moineau.

v. 1. Sec. 3. Bacteriophage-host interactions: 20. Construction of phage mutants (general)/ Robert Villafane-- 21. Modifying bacteriophage l with recombineering / Lynn C. Thomason, Amos B. Oppenheim, and Donald L. Court -- 22. Identification and isolation of lysogens with induced prophage / Jonathan Livny, Christopher N. LaRock and David I. Friedman -- 23. Generalized transduction / Anne Thierauf, Gerardo Perez, and Stanley Maloy -- 24. Preparation and characterization of anti-phage serum / Thomas E. Waddell ... [et al.] -- 25. Generalized transduction by lytic bacteriophages / Thomas E. Waddell ... [et al.].

v. 2. Molecular and applied aspects: v. 2. Sec. 1. Bacteriophage genomics: 1. Preparation of bacteriophage lysates and pure DNA / Derek John Juan Pickard -- 2. Approaches to the compositional analysis of DNA / Richard A. Manderville and Andrew M. Kropinski -- 3. Determination of bacteriophage genome size by pulsed-field gel electrophoresis / Erika Lingohr, Shelley Frost, and Roger P. Johnson -- 4. Preparation of a phage DNA fragment library for whole genome shotgun sequencing / Elizabeth J. Summer -- 5. PCR and partial sequencing of bacteriophage genomes / Martha Clokie -- 6. In Silico identification of genes in bacteriophage DNA / Andrew M. Kropinski ... [et al.] -- 7. Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions / Sherwood R. Casjens and Eddie B. Gilcrease -- 8. In Silico characterization of DNA motifs with particular reference to promoters and terminators / Rob Lavigne, Andre Villegas and Andrew M. Kropinksi -- 9. Molecular phylogenetics / David A. Walsh and Adrian K. Sharma -- v.2 Sec. 2. Bacteriophage transcriptomics and proteomics 10. Preparation of RNA from bacteria infected with bacteriophages, a case study from the marine unicellular synechococcus sp. WH7803 Infected by Phage S-PM2 / Jinyu Shan and Martha Clokie -- 11. Quantification of host and Phage mRNA expression during Infection using real-time PCR / Martha R. J. Clokie -- 12. Oligonucleotide microarrays for bacteriophage expression studies / Andrew D. Millard and Bella Tiwari -- 13. Purification of bacteriophages and SDS-PAGE analysis of phage structural proteins from ghost particles / Pascale Boulanger -- 14. Phage proteomics, applications of mass spectrometry / Rob Lavigne, Pieter-Jan Ceyssens and J. Robben --

v. 2. Sec. 3: Community bacteriophage approaches: 15. Isolation independent methods of characterizing phage communities 1, strain typing using fingerprinting methods / Clemens Pausz, Jessica L. Clasen, and Curtis A. Suttle -- 16. Isolation independent methods of characterizing phage communities 2, characterizing a metagenome / K. Eric Wommack ... [et al.] -- v. 2. Sec. 4. Applied aspects of bacteriophage biology: 17. Phage typing / Irina Chirakadze, Ann Perets, and Rafiq Ahmed -- 18. A Genetic screen to identify bacteriophage lysins / Raymond Schuch, Vincent A. Fischetti and Daniel C. Nelson -- 19. General M13 phage display, M13 phage display in identification and characterization of protein-protein interactions / Kirsten Hertveldt, Tim Belien, and Guido Volckaert -- 20. Isolation of monoclonal antibody fragments from phage display libraries / Mehdi Arbabi-Ghahroudi, Jamshid Tanha, and Roger MacKenzie -- 21. Internet resources of Interest to bacteriophage workers / Andrew M. Kropinski.

v. 3. Basic phage mathematics / Stephen T. Abedon and Tena I. Katsaounis -- Analysis of host-takeover during SPO1 infection of Bacillus subtilis / Charles R. Stewart -- Practical advice on the one-step growth curve / Andrew M. Kropinski -- Iron chloride flocculation of bacteriophages from seawater / Bonnie T. Poulos, Seth G. John, and Matthew B. Sullivan -- Purification of bacteriophages using anion-exchange chromatography / Dieter Vandenheuvel, Sofie Rombouts, and Evelien M. Adriaenssens -- Encapsulation strategies of bacteriophage (Felix O1) for oral therapeutic application / Golam S. Islam, Qi Wang, and Parviz M. Sabour -- Encapsulation of listeria phage A511 by alginate to improve its thermal stability / Hanie Ahmadi, Qi Wang, Loong-Tak Lim, and S. Balamurugan -- Application of a virucidal agent to avoid overestimation of phage kill during phage decontamination assays on ready-to-eat meats / Andrew Chibeu and S. Balamurugan -- Sequencing, assembling, and finishing complete bacteriophage genomes / Daniel A. Russell -- Identification of DNA base modifications by means of pacific biosciences RS sequencing technology / Philip Kelleher, James Murphy, Jennifer Mahony, and Douwe van Sinderen -- Analyzing genome termini of bacteriophage through high-throughput sequencing / Xianglilan Zhang, Yahui Wang, and Yigang Tong -- Amplification for whole genome sequencing of bacteriophages from single isolated plaques using SISPA / Derick E. Fouts -- Genome sequencing of dsDNA-containing bacteriophages directly from a single plaque / Witold Kot -- Preparing cDNA libraries from lytic phage-infected cells for whole transcriptome analysis by RNA-Seq / Bob Blasdel, Pieter-Jan Ceyssens, and Rob Lavigne -- Essential steps in characterizing bacteriophages : biology, taxonomy, and genome analysis / Ramy Karam Aziz, Hans-Wolfgang Ackermann, Nicola K. Petty, and Andrew M. Kropinski -- Annotation of bacteriophage genome sequences using DNA master : an overview / Welkin H. Pope and Deborah Jacobs-Sera -- Phage genome annotation using the RAST pipeline / Katelyn McNair, Ramy Karam Aziz, Gordon D. Pusch, Ross Overbeek, Bas E. Dutilh, and Robert Edwards -- Visualization of phage genomic data : comparative genomics and publication-quality diagrams / Dann Turner, J. Mark Sutton, Darren M. Reynolds, Eby M. Sim, and Nicola K. Petty -- Transposable bacteriophages as genetic tools / Ariane Toussaint -- Applications of the bacteriophage mu in vitro transposition reaction and genome manipulation via electroporation of DNA transposition complexes / Saija Haapa-Paananen and Harri Savilahti -- Use of RP4 : mini-mu for gene transfer / Frederique Van Gijsegem -- Muprints and whole genome insertion scans : methods for investigating chromosome accessibility and DNA dynamics using bacteriophage mu / N. Patrick Higgins

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Bacteriophages

Bacteriophages.

Methodology.

Clokie, Martha R. J.

Kropinski, Andrew M.

(Andrew Maitland Boleslaw),

1943-

Editor

Editor

Lavigne, Rob, editor

Iran

University of Tehran. Library of College of Science

20220418104859.0

UT_SCI_BL_DB_1003418_0001.pdf

e

BL

278840

a

Y