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عنوان
Basic applied bioinformatics /

پدید آورنده
Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, Mir Asif Iquebal ; with contributions from Ravi GVPPS Kumar [and 8 others].

موضوع
Bioinformatics, Textbooks.,Computational Biology.,Bioinformatics.,MEDICAL-- Biostatistics.,SCIENCE-- Life Sciences-- Biochemistry.

رده
QH324
.
2
.
M85
2018

کتابخانه
Center and Library of Islamic Studies in European Languages

محل استقرار
استان: Qom ـ شهر: Qom

Center and Library of Islamic Studies in European Languages

تماس با کتابخانه : 32910706-025

INTERNATIONAL STANDARD BOOK NUMBER

(Number (ISBN
1119244331
(Number (ISBN
1119244374
(Number (ISBN
1119244412
(Number (ISBN
9781119244332
(Number (ISBN
9781119244370
(Number (ISBN
9781119244417
Erroneous ISBN
9781119244332

TITLE AND STATEMENT OF RESPONSIBILITY

Title Proper
Basic applied bioinformatics /
General Material Designation
[Book]
First Statement of Responsibility
Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, Mir Asif Iquebal ; with contributions from Ravi GVPPS Kumar [and 8 others].

.PUBLICATION, DISTRIBUTION, ETC

Place of Publication, Distribution, etc.
Hoboken, NJ :
Name of Publisher, Distributor, etc.
John Wiley & Sons, Inc.,
Date of Publication, Distribution, etc.
2018.
Date of Publication, Distribution, etc.
©2018

PHYSICAL DESCRIPTION

Specific Material Designation and Extent of Item
1 online resource

INTERNAL BIBLIOGRAPHIES/INDEXES NOTE

Text of Note
Includes bibliographical references and index.

CONTENTS NOTE

Text of Note
Section I: Molecular sequences and structures. Retrieval of sequence(s) from the NCBI Nucleotide database -- Retrieval of protein sequence from UniProtKB -- Downloading protein structure -- Visualizing protein structure -- Sequence format conversion -- Nucleotide sequence analysis using sequence manipulation suite (SMS) -- Detection of restriction enzyme sites -- Section II: Sequence alignment. dot plot analysis -- Needleman-Wunsch algorithm (global alignment) -- Smith-Waterman algorithm (local alignment) -- Sequence alignment using online tools -- Section III: Basic local alignment search tools. Basic local alignment search tool for Nucleotide (BLASTn) -- Basic local alignment search tool for amino acid sequences (BLASTp) -- BLASTx -- tBLASTn -- tBLASTx -- Section IV: Primer designing and quality checking. Primer designing: basics -- Designing PCR primers using the Primer3 online tool -- Quality checking of the designed primers -- Primer designing for SYBR green chemistry of qPCR -- Section V: Molecular phylogenetics. Construction of phylogenetic tree: unweighted‐pair group method with arithmetic mean (UPGMA) -- Construction of phylogenetic tree: Fitch Margoliash (FM) algorithm -- Construction of phylogenetic tree: neighbor‐joining method -- Construction of phylogenetic tree: maximum parsimony method -- Construction of phylogenetic tree: minimum evolution method -- Construction of phylogenetic tree using MEGA7 -- Interpretation of phylogenetic trees -- Section VI: Protein structure prediction. Prediction of secondary structure of protein -- Prediction of tertiary structure of protein: sequence homology -- Protein structure prediction using threading method -- Prediction of tertiary structure of protein: ab initio approach -- Validation of predicted tertiary structure of protein -- Section VII: Molecular docking and binding site prediction. Prediction of transcription binding sites -- Prediction of translation initiation sites -- Molecular docking -- Section VIII: Genome annotation. Genome annotation in prokaryotes -- Genome annotation in eukaryotes -- Section IX: Advanced biocomputational analyses. Concepts of real‐time PCR data analysis -- Overview of microarray data analysis -- Single nucleotide polymorphism (SNP) mining tools -- In silico mining of simple sequence repeats (SSR) markers -- Basics of RNA‐seq data analysis -- Functional annotation of common differentially expressed genes -- Identification of differentially expressed genes (DEGs) -- Estimating MicroRNA expression using the miRDeep2 tool -- miRNA target prediction -- Appendices. Usage of internet for bioinformatics -- important web resources for bioinformatics databases and tools -- NCBI database: a brief account -- EMBL databases and tools: an overview -- Basics of molecular phylogeny -- Evolutionary models of molecular phylogeny.
0

SUMMARY OR ABSTRACT

Text of Note
"An accessible guide that introduces students in all areas of life sciences to bioinformatics Basic Applied Bioinformatics provides a practical guidance in bioinformatics and helps students to optimize parameters for data analysis and then to draw accurate conclusions from the results. In addition to parameter optimization, the text will also familiarize students with relevant terminology. Basic Applied Bioinformatics is written as an accessible guide for graduate students studying bioinformatics, biotechnology, and other related sub-disciplines of the life sciences. This accessible text outlines the basics of bioinformatics, including pertinent information such as downloading molecular sequences (nucleotide and protein) from databases; BLAST analyses; primer designing and its quality checking, multiple sequence alignment (global and local using freely available software); phylogenetic tree construction (using UPGMA, NJ, MP, ME, FM algorithm and MEGA7 suite), prediction of protein structures and genome annotation, RNASeq data analyses and identification of differentially expressed genes and similar advanced bioinformatics analyses. The authors Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, and Mir Asif Iquebal are noted experts in the field and have come together to provide an updated information on bioinformatics. Salient features of this book includes: Accessible and updated information on bioinformatics tools A practical step-by-step approach to molecular-data analyses Information pertinent to study a variety of disciplines including biotechnology, zoology, bioinformatics and other related fields Worked examples, glossary terms, problems and solutions Basic Applied Bioinformatics gives students studying bioinformatics, agricultural biotechnology, animal biotechnology, medical biotechnology, microbial biotechnology, and zoology an updated introduction to the growing field of bioinformatics."--Publisher's description.

ACQUISITION INFORMATION NOTE

Source for Acquisition/Subscription Address
Safari Books Online
Stock Number
CL0500000956

OTHER EDITION IN ANOTHER MEDIUM

Title
Basic applied bioinformatics.
International Standard Book Number
9781119244332

TOPICAL NAME USED AS SUBJECT

Bioinformatics, Textbooks.
Computational Biology.
Bioinformatics.
MEDICAL-- Biostatistics.
SCIENCE-- Life Sciences-- Biochemistry.

(SUBJECT CATEGORY (Provisional

SCI-- 007000

DEWEY DECIMAL CLASSIFICATION

Number
572
.
80285
Edition
23

LIBRARY OF CONGRESS CLASSIFICATION

Class number
QH324
.
2
Book number
.
M85
2018

OTHER CLASS NUMBERS

Class number
MED090000
System Code
bisacsh

PERSONAL NAME - PRIMARY RESPONSIBILITY

Mukhopadhyay, Chandra Sekhar

PERSONAL NAME - ALTERNATIVE RESPONSIBILITY

Choudhary, Ratan Kumar
Iquebal, Mir Asif

ORIGINATING SOURCE

Date of Transaction
20200822152821.0
Cataloguing Rules (Descriptive Conventions))
pn

ELECTRONIC LOCATION AND ACCESS

Electronic name
 مطالعه متن کتاب 

[Book]

Y

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