عنوان

Basic applied bioinformatics

(Number (ISBN

9781119244332 (hardback)

Number

3170

.Language of Text, Soundtrack etc

انگلیسی

Title Proper

Basic applied bioinformatics

General Material Designation

[electronic resources]

First Statement of Responsibility

Chandra Sekhar Mukhopadhvav, Ratan Kumar Choudhary, Mir Asif Iquebal

Place of Publication, Distribution, etc.

Hoboken

Name of Publisher, Distributor, etc.

: Wiley Blackwell

Date of Publication, Distribution, etc.

, 2018.

Specific Material Designation and Extent of Item

xvii, 451 pages

Other Physical Details

: illustrations (some color)

Text of Note

Includes bibliographical references and index.

Text of Note

Dedication Preface Acknowledgements List Of Abbreviations i. Molecular Sequences and Structures Page 1 Retrieval of Sequence(s) from NCBI Nucleotide Database CS Mukhopadhyay; RK Choudhary 2 Retrieval of Protein Sequence from UniProtKB CS Mukhopadhyay; RK Choudhary 3 Downloading Protein Structure CS Mukhopadhyay; RK Choudhary 4 Visualizing Protein Structure CS Mukhopadhyay; RK Choudhary 5 Sequence Format Conversion CS Mukhopadhyay; RK Choudhary 6 Nucleotide Sequence Analysis using Sequence Manipulation Suite (SMS) CS Mukhopadhyay; RK Choudhary 7 Detection of Restriction Enzyme Sites CS Mukhopadhyay; RK Choudhary ii. Sequence Alignment 8 Dot Plot Analysis CS Mukhopadhyay; RK Choudhary 9 Needleman-Wunsch Algorithm (Global Alignment) CS Mukhopadhyay; RK Choudhary 10 Smith-Waterman Algorithm (Local Alignment) CS Mukhopadhyay; RK Choudhary 11 Sequence Alignment using Online Tools CS Mukhopadhyay; RK Choudhary iii. Basic Local Alignment Search Tools 12 Basic Local Alignment Search Tool for nucleotide (BLASTn) CS Mukhopadhyay; RK Choudhary 13 Basic Local Alignment Search Tool for Amino Acid Sequences (BLASTp) CS Mukhopadhyay; RK Choudhary 14 BLASTx CS Mukhopadhyay; RK Choudhary 15 tBLASTn CS Mukhopadhyay; RK Choudhary 16 tBLASTx CS Mukhopadhyay; RK Choudhary iv. Primer Designing and Quality Checking 17 Primer Designing- Basics CS Mukhopadhyay; RK Choudhary 18 Designing of PCR Primers using Primer3 Online Tool CS Mukhopadhyay; RK Choudhary 19 Quality Checking of the Designed Primers CS Mukhopadhyay; RK Choudhary 20 Primer Designing for SYBR Green Chemistry of qPCR CS Mukhopadhyay; RK Choudhary v. Molecular Phylogenetics 21 Construction of Phylogenetic Tree: Unweighted Pair Group Method with Arithmetic mean (UPGMA) CS Mukhopadhyay; RK Choudhary 22 Construction of Phylogenetic tree: Fitch Margoliash (FM) Algorithm CS Mukhopadhyay; RK Choudhary 23 Construction of Phylogenetic tree: Neighbor Joining Method CS Mukhopadhyay; RK Choudhary 24 Construction of Phylogenetic Tree: Maximum Parsimony Method CS Mukhopadhyay; RK Choudhary 25 Construction of Phylogenetic tree: Minimum Evolution Method CS Mukhopadhyay; RK Choudhary 26 Construction of Phylogenetic Tree using MEGA7 CS Mukhopadhyay; RK Choudhary 27 Interpretation of Phylogenetic Trees CS Mukhopadhyay; RK Choudhary vi. Protein Structure Prediction 28 Prediction of Secondary Structure of Protein CS Mukhopadhyay; RK Choudhary 29 Prediction of Tertiary Structure of Protein: Sequence Homology CS Mukhopadhyay; RK Choudhary 30 Protein Structure Prediction using Threading Method CS Mukhopadhyay; HK Manku 31 Prediction of Tertiary Structure of Protein: Ab Initio Approach CS Mukhopadhyay; RK Choudhary 32 Validation of Predicted Tertiary Structure Protein CS Mukhopadhyay; RK Choudhary vii. Molecular Docking and Binding Site Prediction 33 Predicting Transcription Binding Sites S Jain; S Panwar; A Kumar 34 Predicting Translation Initiation Sites S Jain; S Panwar; A Kumar 35 Docking of Ligand Receptors CS Mukhopadhyay; HK Manku viii. Genome Annotation 36 Genome Annotation in Prokaryotes CS Mukhopadhyay; RK Choudhary 37 Genome Annotation in Eukaryotes CS Mukhopadhyay; RK Choudhary ix. Advanced Biocomputational Analyses 38 Concepts of Real Time PCR Data Analysis RK Choudhary 39 Overview of Micro-array Data Analysis RK Choudhary 40 Single Nucleotide Polymorphism (SNP) Mining Tools MA Iquebal; Sarika; D Kumar 41 In silico Mining of Simple Sequence Repeats (SSR) Markers MA Iquebal; Sarika; D Kumar 42 Basics of RNA-Seq Data Analysis GVPPSR Kumar; AP Sahoo; A Kumar 43 Functional Annotation of Common Differentially Expressed Genes GVPPSR Kumar; AP Sahoo; A Kumar 44 Identification of Differentially Expressed Genes (DEGs) GVPPSR Kumar; A Kumar; AP Sahoo 45 Estimating MicroRNA expression using miRDeep2 tool GVPPSR Kumar; A Kumar; AP Sahoo 46 In silico prediction of miRNA Targets Sarika; MA Iquebal; D Kumar x. Appendices App. A Usage of Internet for Bioinformatics RK Choudhary App. B Important Web-Resources for Bioinformatics Databases and Tools CS Mukhopadhyay; RK Choudhary App. C Usage of NCBI Database Resources CS Mukhopadhyay; RK Choudhary App. D Usage of Important EMBL Tools S Jain; S Panwar; A Kumar App. F Evolutionary Models of Molecular Phylogeny CS Mukhopadhyay; RK Choudhary

0

Text of Note

"This book provides practical guidance in bioinformatics and helps students to optimize parameters for data analysis and then to draw accurate conclusions from the results. In addition to parameter optimization, the text will also familiarize students with relevant terminology"--

Entry Element

Bioinformatics Textbooks.

Entry Element

MEDICAL / Biostatistics.

Entry Element

علوم زیستی

Entry Element

Life sciences

Entry Element

زیست‌انفورماتیک

Entry Element

Bioinformatics

Form Subdivision

Textbooks.

a05

a05

a07

a07

Bioinformatics -- Textbooks.

Edition

Class number

Book number

System Code

Entry Element

Mukhopadhyay, Chandra Sekhar,

Relator Code

Author

Entry Element

Choudhary, Ratan Kumar,

Entry Element

Iquebal, Mir Asif,

Relator Code

Author

Relator Code

Author

Country

ایران

Agency

Central Library of the Kurdistan University

Date of Transaction

20190701155357.0

Cataloguing Rules (Descriptive Conventions))

rda

Electronic name

e

BL

280328

a

Y