Contents: 1. Identification of Copy Number Variants from SNP Arrays using PennCNV Li Fang and Kai Wang 2. Using SAAS-CNV to Detect and Characterize Somatic Copy Number Alterations in Cancer Genomes from Next Generation Sequencing and SNP Array Data Zhongyang Zhang and Ke Hao 3. Statistical Detection of Genome Differences Based on CNV Segments Yang Zhou, Derek M. Bickhart, and George E. Liu 4. Whole Genome Shotgun Sequence CNV Detection using Read Depth Fatma Kahveci and Can Alkan 5. Read Depth Analysis to Identify CNV in Bacteria using CNOGpro Ola Brynildsrud 6. Using HaMMLET for Bayesian Segmentation of WGS read-depth Data John Wiedenhoeft and Alexander Schliep 7. Split-Read InDel and Structural Variant Calling Using PINDEL Kai Ye, Li Guo, Xiaofei Yang, Eric-Wubbo Lamijer, Keiran Raine, and Zemin Ning 8. Detecting Small Inversions using SRinversion Ruoyan Chen, Yu Lung Lau, and Wanling Yang 9. Detection of CNVs in NGS data using VS-CNV Nathan Fortier, Gabe Rudy, and Andreas Scherer 10. Structural Variant Breakpoint Detection with novoBreak Zechen Chong and Ken Chen 11. Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures Derek M. Bickhart 12. Versatile Identification of Copy Number Variants with Canvas Sergii Ivakhno and Eric Roller 13. Markov Chain Monte Carlo SV Calling with SVelter Xuefang Zhao 14. Analysis of Population-genetic Properties of Copy Number Variations Lingyang Xu, Yang Liu, Derek M. Bickhart, JunYa Li, and George E. Liu 15. Validation of Genomic Structural Variants through Long Sequencing Technologies Xuefang Zhao 16. Structural Variation Detection and Analysis using Bionano Optical Mapping Saki Chan, Ernest Lam, Michael Saghbini, Sven Bocklandt, Alex Hastie, Han Cao, Erik Holmlin, and Mark Borodkin.